Projects that are tagged with string kernel.


Logo JMLR SHOGUN 4.0.0

by sonne - February 5, 2015, 09:09:37 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 97788 views, 13836 downloads, 6 subscriptions

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About: The SHOGUN machine learning toolbox's focus is on large scale learning methods with focus on Support Vector Machines (SVM), providing interfaces to python, octave, matlab, r and the command line.

Changes:

This release features the work of our 8 GSoC 2014 students [student; mentors]:

  • OpenCV Integration and Computer Vision Applications [Abhijeet Kislay; Kevin Hughes]
  • Large-Scale Multi-Label Classification [Abinash Panda; Thoralf Klein]
  • Large-scale structured prediction with approximate inference [Jiaolong Xu; Shell Hu]
  • Essential Deep Learning Modules [Khaled Nasr; Sergey Lisitsyn, Theofanis Karaletsos]
  • Fundamental Machine Learning: decision trees, kernel density estimation [Parijat Mazumdar ; Fernando Iglesias]
  • Shogun Missionary & Shogun in Education [Saurabh Mahindre; Heiko Strathmann]
  • Testing and Measuring Variable Interactions With Kernels [Soumyajit De; Dino Sejdinovic, Heiko Strathmann]
  • Variational Learning for Gaussian Processes [Wu Lin; Heiko Strathmann, Emtiyaz Khan]

It also contains several cleanups and bugfixes:

Features

  • New Shogun project description [Heiko Strathmann]
  • ID3 algorithm for decision tree learning [Parijat Mazumdar]
  • New modes for PCA matrix factorizations: SVD & EVD, in-place or reallocating [Parijat Mazumdar]
  • Add Neural Networks with linear, logistic and softmax neurons [Khaled Nasr]
  • Add kernel multiclass strategy examples in multiclass notebook [Saurabh Mahindre]
  • Add decision trees notebook containing examples for ID3 algorithm [Parijat Mazumdar]
  • Add sudoku recognizer ipython notebook [Alejandro Hernandez]
  • Add in-place subsets on features, labels, and custom kernels [Heiko Strathmann]
  • Add Principal Component Analysis notebook [Abhijeet Kislay]
  • Add Multiple Kernel Learning notebook [Saurabh Mahindre]
  • Add Multi-Label classes to enable Multi-Label classification [Thoralf Klein]
  • Add rectified linear neurons, dropout and max-norm regularization to neural networks [Khaled Nasr]
  • Add C4.5 algorithm for multiclass classification using decision trees [Parijat Mazumdar]
  • Add support for arbitrary acyclic graph-structured neural networks [Khaled Nasr]
  • Add CART algorithm for classification and regression using decision trees [Parijat Mazumdar]
  • Add CHAID algorithm for multiclass classification and regression using decision trees [Parijat Mazumdar]
  • Add Convolutional Neural Networks [Khaled Nasr]
  • Add Random Forests algorithm for ensemble learning using CART [Parijat Mazumdar]
  • Add Restricted Botlzmann Machines [Khaled Nasr]
  • Add Stochastic Gradient Boosting algorithm for ensemble learning [Parijat Mazumdar]
  • Add Deep contractive and denoising autoencoders [Khaled Nasr]
  • Add Deep belief networks [Khaled Nasr]

Bugfixes

  • Fix reference counting bugs in CList when reference counting is on [Heiko Strathmann, Thoralf Klein, lambday]
  • Fix memory problem in PCA::apply_to_feature_matrix [Parijat Mazumdar]
  • Fix crash in LeastAngleRegression for the case D greater than N [Parijat Mazumdar]
  • Fix memory violations in bundle method solvers [Thoralf Klein]
  • Fix fail in library_mldatahdf5.cpp example when http://mldata.org is not working properly [Parijat Mazumdar]
  • Fix memory leaks in Vowpal Wabbit, LibSVMFile and KernelPCA [Thoralf Klein]
  • Fix memory and control flow issues discovered by Coverity [Thoralf Klein]
  • Fix R modular interface SWIG typemap (Requires SWIG >= 2.0.5) [Matt Huska]

Cleanup and API Changes

  • PCA now depends on Eigen3 instead of LAPACK [Parijat Mazumdar]
  • Removing redundant and fixing implicit imports [Thoralf Klein]
  • Hide many methods from SWIG, reducing compile memory by 500MiB [Heiko Strathmann, Fernando Iglesias, Thoralf Klein]

Logo Elefant 0.4

by kishorg - October 17, 2009, 08:48:19 CET [ Project Homepage BibTeX Download ] 19027 views, 7929 downloads, 2 subscriptions

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About: Elefant is an open source software platform for the Machine Learning community licensed under the Mozilla Public License (MPL) and developed using Python, C, and C++. We aim to make it the platform [...]

Changes:

This release contains the Stream module as a first step in the direction of providing C++ library support. Stream aims to be a software framework for the implementation of large scale online learning algorithms. Large scale, in this context, should be understood as something that does not fit in the memory of a standard desktop computer.

Added Bundle Methods for Regularized Risk Minimization (BMRM) allowing to choose from a list of loss functions and solvers (linear and quadratic).

Added the following loss classes: BinaryClassificationLoss, HingeLoss, SquaredHingeLoss, ExponentialLoss, LogisticLoss, NoveltyLoss, LeastMeanSquareLoss, LeastAbsoluteDeviationLoss, QuantileRegressionLoss, EpsilonInsensitiveLoss, HuberRobustLoss, PoissonRegressionLoss, MultiClassLoss, WinnerTakesAllMultiClassLoss, ScaledSoftMarginMultiClassLoss, SoftmaxMultiClassLoss, MultivariateRegressionLoss

Graphical User Interface provides now extensive documentation for each component explaining state variables and port descriptions.

Changed saving and loading of experiments to XML (thereby avoiding storage of large input data structures).

Unified automatic input checking via new static typing extending Python properties.

Full support for recursive composition of larger components containing arbitrary statically typed state variables.


Logo mSplicer 0.3

by sonne - May 18, 2008, 13:07:40 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 6358 views, 1385 downloads, 3 subscriptions

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About: For modern biology, precise genome annotations are of prime importance as they allow the accurate definition of genic regions. We employ state of the art machine learning methods to assay and [...]

Changes:

Initial Announcement on mloss.org.


Logo Local Alignment Kernels 0.3.2

by hiroto - December 1, 2007, 00:10:23 CET [ Project Homepage BibTeX Download ] 6019 views, 1467 downloads, 0 subscriptions

About: Local alignment kernels measure the similarity between two sequences by summing up scores obtained from local alignments with gaps of the sequences.

Changes:

Initial Announcement on mloss.org.