Projects running under solaris.


Logo Java Statistical Analysis Tool 0.0.4

by EdwardRaff - March 5, 2016, 06:28:14 CET [ Project Homepage BibTeX Download ] 695 views, 180 downloads, 2 subscriptions

About: General purpose Java Machine Learning library for classification, regression, and clustering.

Changes:

Initial Announcement on mloss.org.


Logo JMLR Jstacs 2.2

by keili - February 17, 2016, 11:57:56 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 21838 views, 5114 downloads, 3 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences

Changes:

New classes and packages:

  • CorreationCoefficient: PerformanceMeasure
  • de.jstacs.clustering: package with classes for hierarchical clustering
  • DeBruijnGraphSequenceGenerator and DeBruijnSequenceGenerator for generating De Buijn sequences
  • CyclicSequenceAdaptor for representing cyclic sequences
  • PlotGeneratorResult for representing results that plot images to a Graphics2D object
  • TextResult for results that may be stored as text files
  • package de.jstacs.results.savers for generic classes that store results to disk
  • LimitedSparseLocalInhomogeneousMixtureDiffSM_higherOrder for sparse local inhomogeneous mixture (Slim) models
  • PFMWrapperTrainSM for representing position frequency matrices and position weight matrices from databases
  • package de.jstacs.tools with classes for generic Jstacs tools that may be used in different user interfaces (command line, Galaxy, JavaFX)
  • Compression for ZIP compression of Strings
  • package de.jstacs.utils.graphics with generic GraphicsAdaptor using Apache XML commons
  • projects: Dimont, GeMoMa, Slim, TALEN, motif comparison

New features and improvements:

  • Major restructuring of Alignment for better efficiency
  • Alignment Costs and StringAlignment now Storable
  • New constructor of DataSet allowing a specified percentage of sequences to mismatch the given alphabet
  • BioJavaAdapter ported to BioJava 1.9
  • XMLParser now also allows for storing Sequences
  • New method for parsing HMMer profile HMMs in HMMFactory
  • Several minor improvements and bugfixes in many classes
  • Improvements of documentation of several classes

Logo JMLR dlib ml 18.18

by davis685 - October 29, 2015, 01:48:44 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 139244 views, 22798 downloads, 4 subscriptions

About: This project is a C++ toolkit containing machine learning algorithms and tools for creating complex software in C++ to solve real world problems.

Changes:

This release has focused on build system improvements, both for the Python API and C++ builds using CMake. This includes adding a setup.py script for installing the dlib Python API as well as a make install target for installing a C++ shared library for non-Python use.


Logo OpenOpt 0.54

by Dmitrey - June 15, 2014, 14:50:37 CET [ Project Homepage BibTeX Download ] 60987 views, 12756 downloads, 3 subscriptions

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About: Universal Python-written numerical optimization toolbox. Problems: NLP, LP, QP, NSP, MILP, LSP, LLSP, MMP, GLP, SLE, MOP etc; general logical constraints, categorical variables, automatic differentiation, stochastic programming, interval analysis, many other goodies

Changes:

http://openopt.org/Changelog


Logo MyMediaLite 3.10

by zenog - October 8, 2013, 22:29:29 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 67085 views, 12322 downloads, 1 subscription

About: MyMediaLite is a lightweight, multi-purpose library of recommender system algorithms.

Changes:

Mostly bug fixes.

For details see: https://github.com/zenogantner/MyMediaLite/blob/master/doc/Changes


Logo Multilinear Principal Component Analysis 1.3

by hplu - September 8, 2013, 13:04:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 6803 views, 1301 downloads, 1 subscription

About: A Matlab implementation of Multilinear PCA (MPCA) and MPCA+LDA for dimensionality reduction of tensor data with sample code on gait recognition

Changes:
  1. The MPCA paper is updated with a typo (the MAD measure in Table II) corrected.

  2. Tensor toolbox version 2.1 is included for convenience.

  3. Full code on gait recognition is included for verification and comparison.


Logo Uncorrelated Multilinear Discriminant Analysis 1.0

by hplu - July 7, 2012, 06:27:56 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 4440 views, 936 downloads, 1 subscription

About: A Matlab implementation of Uncorrelated Multilinear Discriminant Analysis (UMLDA) for dimensionality reduction of tensor data via tensor-to-vector projection

Changes:

Initial Announcement on mloss.org.


Logo Uncorrelated Multilinear Principal Component Analysis 1.0

by hplu - June 18, 2012, 17:23:52 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 3790 views, 810 downloads, 1 subscription

About: A Matlab implementation of Uncorrelated Multilinear PCA (UMPCA) for dimensionality reduction of tensor data via tensor-to-vector projection

Changes:

Initial Announcement on mloss.org.


Logo svmPRAT 1.0

by rangwala - December 28, 2009, 00:27:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5117 views, 1283 downloads, 1 subscription

About: BACKGROUND:Over the last decade several prediction methods have been developed for determining the structural and functional properties of individual protein residues using sequence and sequence-derived information. Most of these methods are based on support vector machines as they provide accurate and generalizable prediction models. RESULTS:We present a general purpose protein residue annotation toolkit (svmPRAT) to allow biologists to formulate residue-wise prediction problems. svmPRAT formulates the annotation problem as a classification or regression problem using support vector machines. One of the key features of svmPRAT is its ease of use in incorporating any user-provided information in the form of feature matrices. For every residue svmPRAT captures local information around the reside to create fixed length feature vectors. svmPRAT implements accurate and fast kernel functions, and also introduces a flexible window-based encoding scheme that accurately captures signals and pattern for training eective predictive models. CONCLUSIONS:In this work we evaluate svmPRAT on several classification and regression problems including disorder prediction, residue-wise contact order estimation, DNA-binding site prediction, and local structure alphabet prediction. svmPRAT has also been used for the development of state-of-the-art transmembrane helix prediction method called TOPTMH, and secondary structure prediction method called YASSPP. This toolkit developed provides practitioners an efficient and easy-to-use tool for a wide variety of annotation problems. Availability: http://www.cs.gmu.edu/~mlbio/svmprat/

Changes:

Initial Announcement on mloss.org.


Logo JMLR Shark 2.3.0

by igel - October 24, 2009, 22:12:48 CET [ Project Homepage BibTeX Download ] 31033 views, 6089 downloads, 1 subscription

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About: SHARK is a modular C++ library for the design and optimization of adaptive systems. It provides various machine learning and computational intelligence techniques.

Changes:
  • new build system
  • minor bug fixes

Logo CRFsuite 0.8

by chokkan - March 18, 2009, 15:19:02 CET [ Project Homepage BibTeX Download ] 6431 views, 1648 downloads, 1 subscription

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About: CRFSuite is a speed-oriented implementation of Conditional Random Fields (CRFs). This software features: parameter estimation using SGD and L-BFGS, l1/l2 regularization, simple data I/O format, etc.

Changes:

Initial Announcement on mloss.org.


Logo figtree 0.9.2

by vmorariu - January 17, 2009, 00:13:32 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5432 views, 4604 downloads, 1 subscription

About: A library for fast computation of Gauss transforms in multiple dimensions, using the Improved Fast Gauss Transform and a tree data structure. This library is useful for efficient Kernel Density [...]

Changes:

Initial Announcement on mloss.org.


Logo Ngram Statistics Package 1.09

by tpederse - August 12, 2008, 18:21:52 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 7033 views, 1594 downloads, 0 comments, 1 subscription

About: The Ngram Statistics Package is a suite of Perl modules that identifies significant multi-word units (collocations) in written text using many different tests of association. NSP allows a user to [...]

Changes:

Initial Announcement on mloss.org.


Logo WordNet Similarity 2.05

by tpederse - August 12, 2008, 16:42:50 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 6903 views, 1723 downloads, 2 subscriptions

About: This is a Perl module that implements a variety of semantic similarity and relatedness measures based on information found in the lexical database WordNet. In particular, it supports the measures of [...]

Changes:

Initial Announcement on mloss.org.


Logo SenseClusters 1.01

by tpederse - August 12, 2008, 16:39:57 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 7457 views, 2134 downloads, 1 subscription

About: SenseClusters is a package of (mostly) Perl programs that allows a user to cluster similar contexts together using unsupervised knowledge-lean methods. These techniques have been applied to word [...]

Changes:

Initial Announcement on mloss.org.


Logo TiMBL 6.1

by antalvdb - January 11, 2008, 09:20:57 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 6756 views, 1497 downloads, 0 comments, 0 subscriptions

About: The TiMBL software package is a fast, decision-tree-based implementation of k-nearest neighbor classification. The package includes the IB1, IB2, TRIBL, TRIBL2, and IGTree algorithms, and offers [...]

Changes:

Initial Announcement on mloss.org.