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Logo JMLR GPML Gaussian Processes for Machine Learning Toolbox 4.1

by hn - November 27, 2017, 19:26:13 CET [ Project Homepage BibTeX Download ] 49641 views, 10951 downloads, 5 subscriptions

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About: The GPML toolbox is a flexible and generic Octave/Matlab implementation of inference and prediction with Gaussian process models. The toolbox offers exact inference, approximate inference for non-Gaussian likelihoods (Laplace's Method, Expectation Propagation, Variational Bayes) as well for large datasets (FITC, VFE, KISS-GP). A wide range of covariance, likelihood, mean and hyperprior functions allows to create very complex GP models.

Changes:

Logdet-estimation functionality for grid-based approximate covariances

  • Lanczos subspace estimation

  • Chebyshef polynomial expansion

More generic infEP functionality

  • dense computations and sparse approximations using the same code

  • covering KL inference as a special cas of EP

New infKL function contributed by Emtiyaz Khan and Wu Lin

  • Conjugate-Computation Variational Inference algorithm

  • much more scalable than previous versions

Time-series covariance functions on the positive real line

  • covW (i-times integrated) Wiener process covariance

  • covOU (i-times integrated) Ornstein-Uhlenbeck process covariance (contributed by Juan Pablo Carbajal)

  • covULL underdamped linear Langevin process covariance (contributed by Robert MacKay)

  • covFBM Fractional Brownian motion covariance

New covariance functions

  • covWarp implements k(w(x),w(z)) where w is a "warping" function

  • covMatern has been extended to also accept non-integer distance parameters


Logo MLweb 1.1

by lauerfab - November 10, 2017, 11:34:48 CET [ Project Homepage BibTeX Download ] 12748 views, 3041 downloads, 3 subscriptions

About: MLweb is an open source project that aims at bringing machine learning capabilities into web pages and web applications, while maintaining all computations on the client side. It includes (i) a javascript library to enable scientific computing within web pages, (ii) a javascript library implementing machine learning algorithms for classification, regression, clustering and dimensionality reduction, (iii) a web application providing a matlab-like development environment.

Changes:
  • Add gaxpy() and documentation on in-place operations
  • Add loo() function to Classifier and Regression models
  • New contributed toolbox for RNN
  • Minor fixes

Logo Accord.NET Framework 3.8.0

by cesarsouza - October 23, 2017, 20:50:27 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 41973 views, 7082 downloads, 2 subscriptions

About: The Accord.NET Framework is a .NET machine learning framework combined with audio and image processing libraries completely written in C#. It is a complete framework for building production-grade computer vision, computer audition, signal processing and statistics applications even for commercial use. A comprehensive set of sample applications provide a fast start to get up and running quickly, and an extensive online documentation helps fill in the details.

Changes:

For a complete list of changes, please see the full release notes at the release details page at:

https://github.com/accord-net/framework/releases/tag/v3.8.0


Logo JMLR Jstacs 2.3

by keili - September 13, 2017, 14:25:38 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 32468 views, 7472 downloads, 4 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences

Changes:

New classes and packages:

  • Jstacs 2.3 is the first release to be accompanied by JstacsFX, a library for building JavaFX-based graphical user interfaces based on JstacsTools
  • new interface MultiThreadedFunction
  • new class LargeSequenceReader for reading large sequence files in chunks
  • new interface QuickScanningSequenceScore
  • new class RegExpValidator for checking String inputs against a regular expression
  • new class IUPACDNAAlphabet

New features and improvements:

  • Alignments may now handle different costs for insert and delete gaps
  • ListResults may now be constructed from Collections of ResultSets
  • Several minor improvements and bugfixes in many classes
  • Improvements of documentation of several classes

Logo JMLR MLPACK 2.2.5

by rcurtin - August 26, 2017, 06:07:47 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 93944 views, 16816 downloads, 6 subscriptions

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About: A scalable, fast C++ machine learning library, with emphasis on usability.

Changes:

Released August 25, 2017.

  • Compilation fix for some systems (#1082).

  • Fix PARAM_INT_OUT() (#1100).


Logo KeLP 2.2.1

by kelpadmin - August 7, 2017, 17:20:39 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 19876 views, 4165 downloads, 3 subscriptions

About: Kernel-based Learning Platform (KeLP) is Java framework that supports the implementation of kernel-based learning algorithms, as well as an agile definition of kernel functions over generic data representation, e.g. vectorial data or discrete structures. The framework has been designed to decouple kernel functions and learning algorithms, through the definition of specific interfaces. Once a new kernel function has been implemented, it can be automatically adopted in all the available kernel-machine algorithms. KeLP includes different Online and Batch Learning algorithms for Classification, Regression and Clustering, as well as several Kernel functions, ranging from vector-based to structural kernels. It allows to build complex kernel machine based systems, leveraging on JSON/XML interfaces to instantiate prediction models without writing a single line of code.

Changes:

In addition to minor bug fixes, this release includes:

  • A new cache (FixSizeKernelCache) that can store a larger number of computations.

  • Evaluators for measuring the quality of Clustering algorithms.

Furthermore we also released the new module kelp-input-generator, that contains the facilities to parse text snippets and generate tree representations for KeLP!

Check out this new version from our repositories. API Javadoc is already available. Your suggestions will be very precious for us, so download and try KeLP 2.2.1!


Logo KeBABS 1.5.4

by UBod - July 28, 2017, 09:55:04 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 23218 views, 4115 downloads, 3 subscriptions

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About: Kernel-Based Analysis of Biological Sequences

Changes:
  • importing apcluster package for avoiding method clashes
  • improved and completed change history in inst/NEWS and package vignette

Logo APCluster 1.4.4

by UBod - July 28, 2017, 09:47:32 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 48677 views, 8057 downloads, 3 subscriptions

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About: The apcluster package implements Frey's and Dueck's Affinity Propagation clustering in R. The package further provides leveraged affinity propagation, exemplar-based agglomerative clustering, and various tools for visual analysis of clustering results.

Changes:
  • changed dependency to suggested package 'kebabs' to version of at least 1.5.4 for improved interoperability
  • bug fix in as.dendrogram() method with signature 'AggExResult'
  • added discrepancy metric to distance computations and updated src/distanceL.c to new version
  • registered C/C++ subroutines
  • minor change in the vignette template
  • moved NEWS to inst/NEWS
  • added inst/COPYRIGHT

Logo SparklingGraph 0.0.7

by riomus - May 22, 2017, 15:29:28 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 7614 views, 1640 downloads, 3 subscriptions

About: Large scale, distributed graph processing made easy.

Changes:

Graph partitioning methods APSP approximation method Performance improvements License change Bug fixes


Logo Kernel Adaptive Filtering Toolbox 2.0

by steven2358 - May 22, 2017, 10:05:33 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 12178 views, 1992 downloads, 2 subscriptions

About: A Matlab benchmarking toolbox for online and adaptive regression with kernels.

Changes:
  • Changes in algorithms' Matlab class format
  • New algorithms
  • Minor improvements and bug fixes

Logo Calibrated AdaMEC 1.0

by nnikolaou - April 8, 2017, 13:57:45 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 1886 views, 359 downloads, 3 subscriptions

About: Code for Calibrated AdaMEC for binary cost-sensitive classification. The method is just AdaBoost that properly calibrates its probability estimates and uses a cost-sensitive (i.e. risk-minimizing) decision threshold to classify new data.

Changes:

Updated license information


Logo revrand 1.0.0

by dsteinberg - January 29, 2017, 04:33:54 CET [ Project Homepage BibTeX Download ] 16205 views, 3407 downloads, 3 subscriptions

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About: A library of scalable Bayesian generalised linear models with fancy features

Changes:
  • 1.0 release!
  • Now there is a random search phase before optimization of all hyperparameters in the regression algorithms. This improves the performance of revrand since local optima are more easily avoided with this improved initialisation
  • Regression regularizers (weight variances) associated with each basis object, this approximates GP kernel addition more closely
  • Random state can be set for all random objects
  • Numerous small improvements to make revrand production ready
  • Final report
  • Documentation improvements

Logo AMIDST Toolbox 0.6.0

by ana - October 14, 2016, 19:35:27 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 8882 views, 1616 downloads, 4 subscriptions

About: A Java Toolbox for Scalable Probabilistic Machine Learning.

Changes:
  • Added sparklink module implementing the integration with Apache Spark. More information here.
  • Fluent pattern in latent-variable-models
  • Predefined model implementing the concept drift detection

Detailed information can be found in the toolbox's web page


About: Nowadays this is very popular to use the deep architectures in machine learning. Deep Belief Networks (DBNs) are deep architectures that use a stack of Restricted Boltzmann Machines (RBM) to create a powerful generative model using training data. DBNs have many abilities such as feature extraction and classification that are used in many applications including image processing, speech processing, text categorization, etc. This paper introduces a new object oriented toolbox with the most important abilities needed for the implementation of DBNs. According to the results of the experiments conducted on the MNIST (image), ISOLET (speech), and the 20 Newsgroups (text) datasets, it was shown that the toolbox can learn automatically a good representation of the input from unlabeled data with better discrimination between different classes. Also on all the aforementioned datasets, the obtained classification errors are comparable to those of the state of the art classifiers. In addition, the toolbox supports different sampling methods (e.g. Gibbs, CD, PCD and our new FEPCD method), different sparsity methods (quadratic, rate distortion and our new normal method), different RBM types (generative and discriminative), GPU based, etc. The toolbox is a user-friendly open source software in MATLAB and Octave and is freely available on the website.

Changes:

New in toolbox

  • Using GPU in Backpropagation
  • Revision of some demo scripts
  • Function approximation with multiple outputs
  • Feature extraction with GRBM in first layer

cardinal


Logo JMLR GPstuff 4.7

by avehtari - June 9, 2016, 17:45:15 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 49787 views, 12366 downloads, 3 subscriptions

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About: The GPstuff toolbox is a versatile collection of Gaussian process models and computational tools required for inference. The tools include, among others, various inference methods, sparse approximations and model assessment methods.

Changes:

2016-06-09 Version 4.7

Development and release branches available at https://github.com/gpstuff-dev/gpstuff

New features

  • Simple Bayesian Optimization demo

Improvements

  • Improved use of PSIS
  • More options added to gp_monotonic
  • Monotonicity now works for additive covariance functions with selected variables
  • Possibility to use gpcf_squared.m-covariance function with derivative observations/monotonicity
  • Default behaviour made more robust by changing default jitter from 1e-9 to 1e-6
  • LA-LOO uses the cavity method as the default (see Vehtari et al (2016). Bayesian leave-one-out cross-validation approximations for Gaussian latent variable models. JMLR, accpeted for publication)
  • Selected variables -option works now better with monotonicity

Bugfixes

  • small error in derivative observation computation fixed
  • several minor bug fixes

Logo ELKI 0.7.1

by erich - March 14, 2016, 13:44:02 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 30446 views, 5252 downloads, 4 subscriptions

About: ELKI is a framework for implementing data-mining algorithms with support for index structures, that includes a wide variety of clustering and outlier detection methods.

Changes:

Additions and improvements from ELKI 0.7.0 to 0.7.1:

Algorithm additions:

  • GriDBSCAN: DBSCAN using grid partitioning (Minkowski distances only)

  • Compare-Means and Sort-Means k-means variations (much faster than traditional k-means)

  • Visualization of dendrograms.

Important bug fixes:

  • Classes with no package ("default package") would cause errors.

  • The fast power function implementation was sometimes returning incorrect results.

  • Random sampling was sometimes not sampling from the full data set.

UI improvements:

  • The file input source will now automatically choose the Arff parser for .arff files.

  • MiniGUI now allows choosing other applications.

  • MiniGUI now displays the command line in a separate field.

  • MiniGUI displays an error message, if an incorrect classpath or JAyatana (on Ubuntu) is detected.

  • Export to png now works, we added a work-around for an open Batik bug.

Smaller changes:

  • Many smaller bug fixes.

  • C-Index for cluster evaluation now can process larger data sets.

  • OPTICS output of undefined reachability fixed.

  • External distance matrixes are easier to use and perform additional checks.

  • Precomputed distance matrixes can answer range and kNN queries.

  • Voronoi visualization can be switched in the menu now.

  • Improved backwards command line compatibility with additional aliases.

  • Added generated @since annotations in JavaDoc.

  • Many new unit tests, renamed to the Java conventions.

  • Low-level reading of service files, to have faster startup.


Logo MDLText 1

by renatoms88 - March 3, 2016, 19:31:25 CET [ BibTeX Download ] 1291 views, 531 downloads, 2 subscriptions

About: testing mloss.org

Changes:

Initial Announcement on mloss.org.


Logo BayesPy 0.4.1

by jluttine - November 2, 2015, 13:40:09 CET [ Project Homepage BibTeX Download ] 22569 views, 4849 downloads, 3 subscriptions

About: Variational Bayesian inference tools for Python

Changes:
  • Define extra dependencies needed to build the documentation

Logo Cognitive Foundry 3.4.2

by Baz - October 30, 2015, 06:53:03 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 36759 views, 6164 downloads, 4 subscriptions

About: The Cognitive Foundry is a modular Java software library of machine learning components and algorithms designed for research and applications.

Changes:
  • General:
    • Upgraded MTJ to 1.0.3.
  • Common:
    • Added package for hash function computation including Eva, FNV-1a, MD5, Murmur2, Prime, SHA1, SHA2
    • Added callback-based forEach implementations to Vector and InfiniteVector, which can be faster for iterating through some vector types.
    • Optimized DenseVector by removing a layer of indirection.
    • Added method to compute set of percentiles in UnivariateStatisticsUtil and fixed issue with percentile interpolation.
    • Added utility class for enumerating combinations.
    • Adjusted ScalarMap implementation hierarchy.
    • Added method for copying a map to VectorFactory and moved createVectorCapacity up from SparseVectorFactory.
    • Added method for creating square identity matrix to MatrixFactory.
    • Added Random implementation that uses a cached set of values.
  • Learning:
    • Implemented feature hashing.
    • Added factory for random forests.
    • Implemented uniform distribution over integer values.
    • Added Chi-squared similarity.
    • Added KL divergence.
    • Added general conditional probability distribution.
    • Added interfaces for Regression, UnivariateRegression, and MultivariateRegression.
    • Fixed null pointer exception that can happen in K-means with an empty cluster.
    • Fixed name of maxClusters property on AgglomerativeClusterer (was called maxMinDistance).
  • Text:
    • Improvements to LDA Gibbs sampler.

Logo KEEL Knowledge Extraction based on Evolutionary Learning 3.0

by keel - September 18, 2015, 12:38:54 CET [ Project Homepage BibTeX Download ] 3082 views, 740 downloads, 1 subscription

About: KEEL (Knowledge Extraction based on Evolutionary Learning) is an open source (GPLv3) Java software tool that can be used for a large number of different knowledge data discovery tasks. KEEL provides a simple GUI based on data flow to design experiments with different datasets and computational intelligence algorithms (paying special attention to evolutionary algorithms) in order to assess the behavior of the algorithms. It contains a wide variety of classical knowledge extraction algorithms, preprocessing techniques (training set selection, feature selection, discretization, imputation methods for missing values, among others), computational intelligence based learning algorithms, hybrid models, statistical methodologies for contrasting experiments and so forth. It allows to perform a complete analysis of new computational intelligence proposals in comparison to existing ones. Moreover, KEEL has been designed with a two-fold goal: research and educational. KEEL is also coupled with KEEL-dataset: a webpage that aims at providing to the machine learning researchers a set of benchmarks to analyze the behavior of the learning methods. Concretely, it is possible to find benchmarks already formatted in KEEL format for classification (such as standard, multi instance or imbalanced data), semi-supervised classification, regression, time series and unsupervised learning. Also, a set of low quality data benchmarks is maintained in the repository.

Changes:

Initial Announcement on mloss.org.


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