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Logo JMLR Jstacs 2.2

by keili - February 17, 2016, 11:57:56 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 23325 views, 5414 downloads, 3 subscriptions

About: A Java framework for statistical analysis and classification of biological sequences

Changes:

New classes and packages:

  • CorreationCoefficient: PerformanceMeasure
  • de.jstacs.clustering: package with classes for hierarchical clustering
  • DeBruijnGraphSequenceGenerator and DeBruijnSequenceGenerator for generating De Buijn sequences
  • CyclicSequenceAdaptor for representing cyclic sequences
  • PlotGeneratorResult for representing results that plot images to a Graphics2D object
  • TextResult for results that may be stored as text files
  • package de.jstacs.results.savers for generic classes that store results to disk
  • LimitedSparseLocalInhomogeneousMixtureDiffSM_higherOrder for sparse local inhomogeneous mixture (Slim) models
  • PFMWrapperTrainSM for representing position frequency matrices and position weight matrices from databases
  • package de.jstacs.tools with classes for generic Jstacs tools that may be used in different user interfaces (command line, Galaxy, JavaFX)
  • Compression for ZIP compression of Strings
  • package de.jstacs.utils.graphics with generic GraphicsAdaptor using Apache XML commons
  • projects: Dimont, GeMoMa, Slim, TALEN, motif comparison

New features and improvements:

  • Major restructuring of Alignment for better efficiency
  • Alignment Costs and StringAlignment now Storable
  • New constructor of DataSet allowing a specified percentage of sequences to mismatch the given alphabet
  • BioJavaAdapter ported to BioJava 1.9
  • XMLParser now also allows for storing Sequences
  • New method for parsing HMMer profile HMMs in HMMFactory
  • Several minor improvements and bugfixes in many classes
  • Improvements of documentation of several classes

Logo MLPY Machine Learning Py 3.5.0

by albanese - March 15, 2012, 09:52:41 CET [ Project Homepage BibTeX Download ] 71612 views, 13127 downloads, 2 subscriptions

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About: mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and of GSL.

Changes:

New features:

  • LibSvm(): pred_probability() now returns probability estimates; pred_values() added
  • LibLinear(): pred_values() and pred_probability() added
  • dtw_std: squared Euclidean option added
  • LCS for series composed by real values (lcs_real()) added
  • Documentation

Fix:

  • wavelet submodule: cwt(): it returned only real values in morlet and poul
  • IRelief(): remove np. in learn()
  • fix rfe_kfda and rfe_w2 when p=1

About: A Java library to create, process and manage mixtures of exponential families.

Changes:

Initial Announcement on mloss.org.