20 projects found that use r as the programming language.
Showing Items 1-20 of 97 on page 1 of 5: 1 2 3 4 5 Next

Logo APCluster 1.4.1

by UBod - December 10, 2014, 12:58:29 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 18401 views, 3378 downloads, 3 subscriptions

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About: The apcluster package implements Frey's and Dueck's Affinity Propagation clustering in R. The package further provides leveraged affinity propagation, exemplar-based agglomerative clustering, and various tools for visual analysis of clustering results.

Changes:
  • fixes in C++ code of sparse affinity propagation

Logo KeBABS 1.0.2

by UBod - December 4, 2014, 09:15:24 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 1002 views, 145 downloads, 1 subscription

About: Kernel-Based Analysis Of Biological Sequences

Changes:
  • a few C code changes for mismatch kernel
  • correction of MCC
  • correction of computation of feature weights for LiblineaR with more than 3 classes

Logo r-cran-CoxBoost 1.4

by r-cran-robot - December 1, 2014, 00:00:05 CET [ Project Homepage BibTeX Download ] 17733 views, 3581 downloads, 3 subscriptions

About: Cox models by likelihood based boosting for a single survival endpoint or competing risks

Changes:

Fetched by r-cran-robot on 2014-12-01 00:00:05.021780


Logo r-cran-Boruta 3.1.0

by r-cran-robot - December 1, 2014, 00:00:03 CET [ Project Homepage BibTeX Download ] 7830 views, 1662 downloads, 2 subscriptions

About: A wrapper algorithm for all-relevant feature selection

Changes:

Fetched by r-cran-robot on 2014-12-01 00:00:03.882945


Logo r-cran-C50 0.1.0-21

by r-cran-robot - November 18, 2014, 00:00:00 CET [ Project Homepage BibTeX Download ] 3142 views, 736 downloads, 0 subscriptions

About: C5.0 Decision Trees and Rule-Based Models

Changes:

Fetched by r-cran-robot on 2014-12-01 00:00:04.054645


Logo r-cran-caret 6.0-37

by r-cran-robot - November 6, 2014, 00:00:00 CET [ Project Homepage BibTeX Download ] 59440 views, 12458 downloads, 1 subscription

About: Classification and Regression Training

Changes:

Fetched by r-cran-robot on 2014-12-01 00:00:04.267999


Logo Somoclu 1.4

by peterwittek - September 5, 2014, 13:01:14 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 5164 views, 977 downloads, 2 subscriptions

About: Somoclu is a massively parallel implementation of self-organizing maps. It relies on OpenMP for multicore execution, MPI for distributing the workload, and it can be accelerated by CUDA on a GPU cluster. A sparse kernel is also included, which is useful for training maps on vector spaces generated in text mining processes.

Changes:
  • Better Windows support.
  • Completed CUDA support for Python and R interfaces.
  • Faster compilation by removing unnecessary flags for nvcc
  • Support for CUDA 6.5.
  • Bug fixes: R version no longer needs separate code.

Logo XGBoost v0.3.0

by crowwork - September 2, 2014, 02:43:31 CET [ Project Homepage BibTeX Download ] 3293 views, 630 downloads, 2 subscriptions

About: xgboost: eXtreme Gradient Boosting It is an efficient and scalable implementation of gradient boosting framework. The package includes efficient linear model solver and tree learning algorithm. The package can automatically do parallel computation with OpenMP, and it can be more than 10 times faster than existing gradient boosting packages such as gbm or sklearn.GBM . It supports various objective functions, including regression, classification and ranking. The package is made to be extensible, so that user are also allowed to define there own objectives easily.

Changes:

New features: - R support that is now on CRAN

  • Faster tree construction module

  • Support for boosting from initial predictions

  • Linear booster is now parallelized, using parallel coordinated descent.


Logo r-cran-e1071 1.6-4

by r-cran-robot - September 1, 2014, 00:00:00 CET [ Project Homepage BibTeX Download ] 14601 views, 3076 downloads, 1 subscription

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About: Misc Functions of the Department of Statistics (e1071), TU Wien

Changes:

Fetched by r-cran-robot on 2014-12-01 00:00:05.177526


Logo r-cran-arules 1.1-5

by r-cran-robot - August 19, 2014, 00:00:00 CET [ Project Homepage BibTeX Download ] 15995 views, 3322 downloads, 3 subscriptions

About: Mining Association Rules and Frequent Itemsets

Changes:

Fetched by r-cran-robot on 2014-12-01 00:00:03.638241


Logo r-cran-bigrf 0.1-11

by r-cran-robot - May 16, 2014, 00:00:00 CET [ Project Homepage BibTeX Download ] 3374 views, 819 downloads, 0 subscriptions

About: Big Random Forests

Changes:

Fetched by r-cran-robot on 2014-12-01 00:00:03.723824


Logo r-cran-CORElearn 0.9.43

by r-cran-robot - May 11, 2014, 00:00:00 CET [ Project Homepage BibTeX Download ] 4921 views, 1148 downloads, 0 subscriptions

About: Classification, regression, feature evaluation and ordinal evaluation

Changes:

Fetched by r-cran-robot on 2014-12-01 00:00:04.936593


Logo r-cran-bst 0.3-4

by r-cran-robot - May 8, 2014, 00:00:00 CET [ Project Homepage BibTeX Download ] 1911 views, 425 downloads, 0 subscriptions

About: Gradient Boosting

Changes:

Fetched by r-cran-robot on 2014-12-01 00:00:03.967644


Logo JMLR fastclime 1.2.3

by colin1898 - March 10, 2014, 08:54:41 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 1853 views, 474 downloads, 1 subscription

About: The package "fastclime" provides a method of recover the precision matrix efficiently by applying parametric simplex method. The computation is based on a linear optimization solver. It also contains a generic LP solver and a parameterized LP solver using parametric simplex method.

Changes:

Initial Announcement on mloss.org.


Logo jackstraw 1.0

by nc - February 1, 2014, 22:53:41 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 1248 views, 260 downloads, 1 subscription

About: Estimates statistical significance of association between variables and their principal components (PCs).

Changes:

Initial Announcement on mloss.org.


Logo hapFabia 1.4.2

by hochreit - December 28, 2013, 17:24:29 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 2748 views, 538 downloads, 1 subscription

About: hapFabia is an R package for identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data. It detects 100 times smaller segments than previous methods.

Changes:

o citation update

o plot function improved


About: hapFabia is an R package for identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data.

Changes:

o citation update

o plot function improved


Logo r-cran-evtree 0.1-4

by r-cran-robot - November 25, 2013, 00:00:00 CET [ Project Homepage BibTeX Download ] 3570 views, 771 downloads, 0 subscriptions

About: Evolutionary Learning of Globally Optimal Trees

Changes:

Fetched by r-cran-robot on 2014-05-01 00:00:05.459097


Logo Bayesian Model Averaging Library 0.3

by duric1 - November 16, 2013, 04:42:05 CET [ Project Homepage BibTeX Download ] 1007 views, 257 downloads, 1 subscription

About: Bayesian Model Averaging for linear models with a wide choice of (customizable) priors. Built-in priorss include coefficient priors (fixed, flexible and hyper-g priors), 5 kinds of model priors, moreover model sampling by enumeration or various MCMC approaches.

Changes:

Initial Announcement on mloss.org.


  • Authors: Duric
  • License: Gnu
  • Programming Language: R

Logo FABIA 2.8.0

by hochreit - October 18, 2013, 10:14:57 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 9639 views, 2012 downloads, 1 subscription

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About: FABIA is a biclustering algorithm that clusters rows and columns of a matrix simultaneously. Consequently, members of a row cluster are similar to each other on a subset of columns and, analogously, members of a column cluster are similar to each other on a subset of rows. Biclusters are found by factor analysis where both the factors and the loading matrix are sparse. FABIA is a multiplicative model that extracts linear dependencies between samples and feature patterns. Applications include detection of transcriptional modules in gene expression data and identification of haplotypes/>identity by descent< consisting of rare variants obtained by next generation sequencing.

Changes:

CHANGES IN VERSION 2.8.0

NEW FEATURES

o rescaling of lapla
o extractPlot does not plot sorted matrices

CHANGES IN VERSION 2.4.0

o spfabia bugfixes

CHANGES IN VERSION 2.3.1

NEW FEATURES

o Getters and setters for class Factorization

2.0.0:

  • spfabia: fabia for a sparse data matrix (in sparse matrix format) and sparse vector/matrix computations in the code to speed up computations. spfabia applications: (a) detecting >identity by descent< in next generation sequencing data with rare variants, (b) detecting >shared haplotypes< in disease studies based on next generation sequencing data with rare variants;
  • fabia for non-negative factorization (parameter: non_negative);
  • changed to C and removed dependencies to Rcpp;
  • improved update for lambda (alpha should be smaller, e.g. 0.03);
  • introduced maximal number of row elements (lL);
  • introduced cycle bL when upper bounds nL or lL are effective;
  • reduced computational complexity;
  • bug fixes: (a) update formula for lambda: tighter approximation, (b) corrected inverse of the conditional covariance matrix of z;

1.4.0:

  • New option nL: maximal number of biclusters per row element;
  • Sort biclusters according to information content;
  • Improved and extended preprocessing;
  • Update to R2.13

Showing Items 1-20 of 97 on page 1 of 5: 1 2 3 4 5 Next