Projects authored by david weese.


Logo seqan 1.2

by sonne - November 2, 2009, 14:54:08 CET [ Project Homepage BibTeX BibTeX for corresponding Paper Download ] 6102 views, 1180 downloads, 1 subscription

About: SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

Changes:
  • 5 more applications, i.e. DFI, MicroRazerS, PairAlign, SeqCons, TreeRecon
  • stable release of RazerS supporting paired-end read mapping and configurable sensitivity
  • new alignment algorithms, e.g. banded, configurable alignments (overlap, semi-global, ...)
  • realignment algorithm
  • NGS data structures and formats, e.g. SAM, Amos, ...
  • new alphabets, e.g. Dna with base call qualities, profile characters
  • auxiliary data structures and algorithms, e.g. double ended queue, command line parser
  • positional scores
  • CMake support